Jaemin's Research Notes
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Protein Modeling Papers
protein-modeling
4 items under this folder.
Sep 19, 2026
OpenDDE — Folding, Reasoning, and Scaling with an Open-Source Drug Discovery Engine
papers
protein-modeling
computational-biology
structure-prediction
co-folding
antibody-antigen
diffusion
pairformer
Sep 10, 2026
BackFlip-2 — Predicting directional flexibility in proteins
papers
protein-modeling
protein-dynamics
geometric-deep-learning
equivariance
molecular-dynamics
flexibility
Jun 26, 2026
MEET — Memory-Efficient Equivariant Transformer for Scalable Peptide Design
paper
protein-design
geometric-deep-learning
equivariance
Jun 26, 2026
Multi-Scale ML for Antibody-Antigen Binding Affinity Prediction
paper
binding-affinity
protein-modeling
evaluation